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Table 5 Parameters selected for YASARA comparative modeling

From: Comparative modeling and docking studies of p16ink4/Cyclin D1/Rb pathway genes in lung cancer revealed functionally interactive residue of RB1 and its functional partner E2F1

Parameters Value
PSI-Blast iteration 3
Psi-BLAST E-value 0.5
Oligomerization state 4
Templates 2–5
Alignment per template 5
Modeling Speed Slow
Loop Samples 50