Table 5 Parameters selected for YASARA comparative modeling
Parameters | Value |
|---|---|
PSI-Blast iteration | 3 |
Psi-BLAST E-value | 0.5 |
Oligomerization state | 4 |
Templates | 2–5 |
Alignment per template | 5 |
Modeling Speed | Slow |
Loop Samples | 50 |
Parameters | Value |
|---|---|
PSI-Blast iteration | 3 |
Psi-BLAST E-value | 0.5 |
Oligomerization state | 4 |
Templates | 2–5 |
Alignment per template | 5 |
Modeling Speed | Slow |
Loop Samples | 50 |
Theoretical Biology and Medical Modelling