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Table 1 Hydrophobic interactions observed in the complex between human TLR9 and the ODN

From: Toll-like receptor 9 interaction with CpG ODN – An in silico analysis approach

Amino acid

Atoms

Nucleotide

Atoms

TYR224

CZ

C8

C3

VAL248

CG1

C8

C5

VAL290

CG2

G9

C5

VAL312

CB

G6

C2

VAL312

CG1

C8

C5

VAL312

CG2

A7

C2

ASP314

CB

G9

C5

ARG337

CD,CZ

A4

C2,C5,C6

ARG337

CZ

T5

C2

ARG337

CB,CZ

G6

C2,C4,C5,C6

LYS338

CD

A7

C2

LYS338

CD,CE

C8

C2

LYS338

CE

G9

C2

ASN340

CG

T10

C5

VAL364

CG1

C3

C5

ALA365

CB

A4

C6

LYS367

CE

T5

C4,C5

MET392

CE

C3

C2,C3

ARG397

CZ

T11

C5