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Table 1 The common pathways associated to up-regulated genes.

From: Pathway landscapes and epigenetic regulation in breast cancer and melanoma cell lines

Type CCL Pathway name Genes p-value q-value
BC Atm signaling ATM; MDM2; RBBP8; JUN; TP73 2.81E-06 7.96E-04
Melanoma   JUN; TP73 5.73E-03 3.42E-02
BC Colorectal cancer JUN; TGFB3; RAF1; DCC 9.04E-03 6.89E-02
Melanoma   MSH2; JUN; DCC; TCF7L2 6.36E-04 1.45E-02
BC DNA repair XPC; LIG3; ATM; TDG; ERCC6; FANCE; FANCC; RAD50 1.30E-04 9.17E-03
Melanoma   MUTYH; POLD1; TDG; FANCA 5.94E-03 3.42E-02
BC Extracellular matrix organization MMP14; TGFB3; ADAM17; CTSG; COL1A2; MMP8; CTSL2 4.01E-03 5.02E-02
Melanoma   COL3A1; COL1A2; ITGB4; TIMP1; COL1A1 2.78E-03 2.38E-02
BC Hemostasis IGF2; PRKCH; PPP2R1B; TGFB3; AKAP1; SERPINC1; VAV2; PRKCE; ANGPT2; GNA12; GNA13; ABCC4; RAF1 9.01E-03 6.89E-02
Melanoma   IGF2; TIMP1; SERPINC1; CD47; PRKCE; GRB7; PDPK1; ITPR3 9.42E-03 4.30E-02
BC Hippo signaling WNT2B; PPP2R1B; TGFB3; WNT1; ID2; TP73; TEAD4 4.62E-03 5.02E-02
Melanoma   DVL3; LATS1; FZD4; TP73; TCF7L2 3.11E-03 2.50E-02