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Figure 1 | Theoretical Biology and Medical Modelling

Figure 1

From: Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

Figure 1

Algorithm of the search for common pairs using seed sets. Step 1. Selection of a "seed" set. Step 2. Identification of all pairs in the "seed" set; only those, which are found in 100% of the "seed" sequences, are taken into further consideration. Step 3. Search for the selected pairs in the whole (+)-training set. Step 4. Only those which are found in more than 80% of sequences of the (+)-training set are taken for into the further consideration. Step 5. Search for the "survived" pairs in the negative training set. Only those which are present in less than 40% of sequences are left. Step 6. The list of the common pairs is ready for the next analysis.

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