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Figure 4 | Theoretical Biology and Medical Modelling

Figure 4

From: Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

Figure 4

Algorithm of the search for complementary pairs using "seed" sets Step 1. Selection of a "seed" set; Step 2. Selection of complementary pairs in the human "seed"; every combination is checked in the (-) training set and only those, which are found in less than 40% of sequences, are taken into further consideration. Step 3. Selection of complementary pairs in the "seed" of orthologs or in the joint "human + orthologs" "seed". (Step 2 may be omitted and substituted by Step 3) Step 4. Search for the selected pairs in the whole (+)-training set. After that the final choice is made.

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