Skip to main content

Table 3 Assignment of training sequences to two subsets. Genes marked with asterisk are known to be activated through LPS-dependent pathway; note that they all belong to one subset.

From: Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

 

Subset 1(LPS-dependent pathway)

Subset 2

Complementary pairs

Elk-1, NF-κB(2) (11–124)

Elk-1, Sp1(1) (14–96)

C/EBP, Sp1(2) (22–87)

C/EBP, NF-κB(1) (4–97)

AP-1, Elk-1(3) (28–39)

NF-κB, Sp1(2) (86–219)

Regulated genes (in the training set)

MCP1*

IL8*

β-Defensin*

MUC1*

ELF3

cytochrome p450

IkBa*

PKC, proteinkinase C

TEL2

c-jun(?)

TFPI-2

 

RhoB, PLAU, IRF-1, hORC2L

Not assigned

SLC29, DPH2L2, FPGS,