Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

Shelest, Ekaterina; Wingender, Edgar

doi:10.1186/1742-4682-2-2

Table 4 Selection of candidate genes identified by the promoter model. The whole list one can find in Additional files.

From: Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

TNFRSF14 tumor necrosis factor receptor superfamily TNFAIP6 tumor necrosis factor, alpha-induced protein 6 PPP3CA protein phosphatase 3 (calcineurin A) NLI-IF nuclear LIM interactor-interacting factor WISP1 WNT1 inducible signaling pathway protein 1 IL8 interleukin 8 TFPI2 tissue factor pathway inhibitor 2 DEFB2 defensin, beta 2 POU2F1 POU domain, class 2, transcription factor 1 MAP2K1IP1 mitogen-activated protein kinase kinase 1 interacting protein 1 CSF2 colony stimulating factor 2 (granulocyte-macrophage) TAF2F TATA box binding protein (TBP)-associated factor RNA polymerase II, F, 55 kD ABT1 TATA-binding protein-binding protein CALN1 calneuron 1 TRAF1 TNF receptor-associated factor 1 FPGS folylpolyglutamate synthase RENT2 regulator of nonsense transcripts 2 CYP26A1 cytochrome P450, subfamily XXVIA EHF ets homologous factor, MAP3K11 mitogen-activated prot. kinase kinase kinase 11 IRAK-M interleukin-1 receptor-associated kinase M ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha HSY11339 GalNAc alpha-2, 6-sialyltransferase I, long form	HCNGP transcriptional regulator protein CYP4F11 cytochrome P450, subfamily IVF IRF3 interferonregulatory factor 3 ICAM3 intercellular adhesion molecule 3 PPARA peroxisome proliferative activated receptor, alpha IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma ELK1 ELK1, member of ETS oncogene family STK31 serine/threonine kinase 31 SERPING1 serine (or cysteine) proteinase inhibitor GPR4 G protein-coupled receptor 4 RAB5B RAB5B, member RAS oncogene family RAB7 RAB7, member RAS oncogene family NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells NFKBIB nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta CEBPE CCAAT/enhancer binding protein (C/EBP), ε ELK1 ELK1, member of ETS oncogene family EHF ets homologous factor 15 Zinc finger proteins small inducible cytokine subfamily A (Cys-Cys), members 5,11, 20 and 23 Interleukins: IL1, IL1delta, IL8, IL12A, IL12B, IL13, IL23,

Back to article page