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Table 3 Overlapping of the predicted gene from our method and Hu's method for the comparison of normal cerebellum and medulloblastoma samples

From: A statistical method for predicting splice variants between two groups of samples using GeneChip® expression array data

Affy Probe Set ID

Gene Symbol

Number of Affymetrix Probes in the Predicted Pseudo-exon

Nucleotide Positions of Predicted Pseudo-exon in the Gene

Descriptions of the Genes

  

Ours

Hu's

Ours

Hu's

 

X04828_at*

GNAI2

3

3

(1668–1701)

(1668–1701)

guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2

U14971_at*

RPS9

19

2

(103–685)

(319–373)

ribosomal protein S9

U29953_rna1_at*

SERPINF1

13

2

(1288–1492)

(1288–1324)

serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1

D87119_at*

TRB2

13

2

(3824–4184)

(4022–4136)

tribbles homolog 2

X69910_at

CKAP4

5

2

(2789–2891)

(2543–2573)

cytoskeleton-associated protein 4

U30999_at

ALCAM

16

2

(25–337)

(373–403)

activated leukocyte cell adhesion molecule

D55716_at

MCM7

8

2

(1952–2096)

(2288–2396)

MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)

  1. * Consistent alternative splice sites between two methods.
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Theoretical Biology and Medical Modelling

ISSN: 1742-4682