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Table 3 Overlapping of the predicted gene from our method and Hu's method for the comparison of normal cerebellum and medulloblastoma samples

From: A statistical method for predicting splice variants between two groups of samples using GeneChip® expression array data

Affy Probe Set ID Gene Symbol Number of Affymetrix Probes in the Predicted Pseudo-exon Nucleotide Positions of Predicted Pseudo-exon in the Gene Descriptions of the Genes
   Ours Hu's Ours Hu's  
X04828_at* GNAI2 3 3 (1668–1701) (1668–1701) guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
U14971_at* RPS9 19 2 (103–685) (319–373) ribosomal protein S9
U29953_rna1_at* SERPINF1 13 2 (1288–1492) (1288–1324) serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
D87119_at* TRB2 13 2 (3824–4184) (4022–4136) tribbles homolog 2
X69910_at CKAP4 5 2 (2789–2891) (2543–2573) cytoskeleton-associated protein 4
U30999_at ALCAM 16 2 (25–337) (373–403) activated leukocyte cell adhesion molecule
D55716_at MCM7 8 2 (1952–2096) (2288–2396) MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)
  1. * Consistent alternative splice sites between two methods.
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Theoretical Biology and Medical Modelling

ISSN: 1742-4682