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Table 3 The results of parameter optimization for scenario B (estimation of pseudo-association rate coefficient in a FRAP experiment).

From: Identification of biomolecule mass transport and binding rate parameters in living cells by inverse modeling

Estimate K a * MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGlbWsdaqhaaWcbaGaemyyaegabaGaeiOkaOcaaaaa@301F@

Initial guesses

Optimized values

  

D f (μm2 s-1)

K a * MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGlbWsdaqhaaWcbaGaemyyaegabaGaeiOkaOcaaaaa@301F@ (s-1)

K d (s-1)

D f (μm2 s-1)

K a * MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGlbWsdaqhaaWcbaGaemyyaegabaGaeiOkaOcaaaaa@301F@ (s-1)

K d (s-1)

RMSE

R 2

30

3.00

0.1108

30

30.0032 (30.3523)

0.1108

0.00 (0.01)

1.000 (0.998)

30

1 × 10-3

0.1108

30

29.9982 (30.2455)

0.1108

0.00 (0.01)

1.000 (0.998)

30

1 × 10-6

0.1108

30

30.0031 (30.2468)

0.1108

0.00 (0.01)

1.000 (0.998)

30

1 × 106

0.1108

30

30.0030 (30.2478)

0.1108

0.00 (0.01)

1.000 (0.998)

30

1 × 103

0.1108

30

30.0031 (30.2507)

0.1108

0.00 (0.01)

1.000 (0.998)

30

300.00

0.1108

30

30.0030 (30.3188)

0.1108

0.00 (0.01)

1.000 (0.998)

30

10.00

0.1108

30

30.0030 (30.2115)

0.1108

0.00 (0.01)

1.000 (0.998)

30

0.050

0.1108

30

30.0030 (30.1655)

0.1108

0.00 (0.01)

1.000 (0.998)

  1. The values in parentheses were obtained using corrupted data.