Table 1 Pan-Genomic CUF & CUB Table
Am.Acid | Codon | Number | CUFi (#/1 k) | CUFij (% of fraction) | rCUF (% of fraction | CUBij (%) | |CUBij(%)| | Am.Acid | Codon | Number | CUFi (#/1 k) | CUFij (% of fraction) | rCUF (% of fraction | CUBij (%) | |CUBij(%)| |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GLY | GGG | 3598776.0 | 12.5 | 19.0 | 25.0 | -6.0 | 6.0 | Trp | TGG | 3675912.0 | 12.7 | 100.0 | 100.0 | 0.0 | 0.0 |
GLY | GGA | 5477754.0 | 19.0 | 28.9 | 25.0 | 3.9 | 3.9 | End | TGA | 308407.0 | 1.1 | 39.9 | 33.0 | 6.9 | 6.9 |
GLY | GGT | 4451391.0 | 15.4 | 23.5 | 25.0 | -1.5 | 1.5 | Cys | TGT | 2509240.0 | 8.7 | 47.2 | 50.0 | -2.8 | 2.8 |
GLY | GGC | 5445255.0 | 18.9 | 28.7 | 25.0 | 3.7 | 3.7 | Cys | TGC | 2810369.0 | 9.7 | 52.8 | 50.0 | 2.8 | 2.8 |
Glu | GAG | 9756293.0 | 33.8 | 51.4 | 50.0 | 1.4 | 1.4 | End | TAG | 183171.0 | 0.6 | 23.7 | 33.0 | -9.3 | 9.3 |
Glu | GAA | 9209632.0 | 31.9 | 48.6 | 50.0 | -1.4 | 1.4 | End | TAA | 281718.0 | 1.0 | 36.4 | 33.0 | 3.4 | 3.4 |
Asp | GAT | 8195141.0 | 28.4 | 54.9 | 50.0 | 4.9 | 4.9 | Tyr | TAT | 4107194.0 | 14.2 | 48.6 | 50.0 | -1.4 | 1.4 |
Asp | GAC | 6731842.0 | 23.3 | 45.1 | 50.0 | -4.9 | 4.9 | Tyr | TAC | 4337253.0 | 15.0 | 51.4 | 50.0 | 1.4 | 1.4 |
Val | GTG | 6428801.0 | 22.3 | 35.3 | 25.0 | 10.3 | 10.3 | Leu | TTG | 4737403.0 | 16.4 | 17.5 | 16.7 | 0.8 | 0.8 |
Val | GTA | 2695055.0 | 9.3 | 14.8 | 25.0 | -10.2 | 10.2 | Leu | TTA | 3136971.0 | 10.9 | 11.6 | 16.7 | -5.1 | 5.1 |
Val | GTT | 4781792.0 | 16.6 | 26.3 | 25.0 | 1.3 | 1.3 | Phe | TTT | 5426287.0 | 18.8 | 48.0 | 50.0 | -2.0 | 2.0 |
Val | GTC | 4280999.0 | 14.8 | 23.5 | 25.0 | -1.5 | 1.5 | Phe | TAC | 5873939.0 | 20.4 | 52.0 | 50.0 | 2.0 | 2.0 |
Ala | GCG | 3487704.0 | 12.1 | 16.8 | 25.0 | -8.2 | 8.2 | Ser | TCG | 2485280.0 | 8.6 | 10.8 | 16.7 | -5.9 | 5.9 |
Ala | GCA | 5031084.0 | 17.4 | 24.3 | 25.0 | -0.7 | 0.7 | Ser | TCA | 3962926.0 | 13.7 | 17.2 | 16.7 | 0.6 | 0.6 |
Ala | GCT | 5779334.0 | 20.0 | 27.9 | 25.0 | 2.9 | 2.9 | Ser | TCT | 4499262.0 | 15.6 | 19.6 | 16.7 | 2.9 | 2.9 |
Ala | GCC | 6432441.0 | 22.3 | 31.0 | 25.0 | 6.0 | 6.0 | Ser | TCC | 4191190.0 | 14.5 | 18.2 | 16.7 | 1.6 | 1.6 |
Arg | AGG | 3071603.0 | 10.6 | 18.9 | 16.7 | 2.3 | 2.3 | Arg | CGG | 2379693.0 | 8.2 | 14.7 | 16.7 | -2.0 | 2.0 |
Arg | AGA | 3953550.0 | 13.7 | 24.4 | 16.7 | 7.7 | 7.7 | Arg | CGA | 1898114.0 | 6.6 | 11.7 | 16.7 | -5.0 | 5.0 |
Ser | AGT | 3473736.0 | 12.0 | 15.1 | 16.7 | -1.6 | 1.6 | Arg | CGT | 2071451.0 | 7.2 | 12.8 | 16.7 | -3.9 | 3.9 |
Ser | AGC | 4391636.0 | 15.2 | 19.1 | 16.7 | 2.4 | 2.4 | Arg | CGC | 2842349.0 | 9.8 | 17.5 | 16.7 | 0.9 | 0.9 |
Lys | AAG | 8869890.0 | 30.7 | 52.7 | 50.0 | 2.7 | 2.7 | Gin | CAG | 6974185.0 | 24.2 | 58.6 | 50.0 | 8.6 | 8.6 |
Lys | AAA | 7946577.0 | 27.5 | 47.3 | 50.0 | -2.7 | 2.7 | Gin | CAA | 4922495.0 | 17.1 | 41.4 | 50.0 | -8.6 | 8.6 |
Asn | AAT | 6514892.0 | 22.6 | 51.9 | 50.0 | 1.9 | 1.9 | His | CAT | 3408853.0 | 11.8 | 49.7 | 50.0 | -0.3 | 0.3 |
Asn | AAC | 6036774.0 | 20.9 | 48.1 | 50.0 | -1.9 | 1.9 | His | CAC | 3453004.0 | 12.0 | 50.3 | 50.0 | 0.3 | 0.3 |
Met | ATG | 6909100.0 | 23.9 | 100.0 | 100.0 | 0.0 | 0.0 | Leu | CTG | 7327412.0 | 25.4 | 27.1 | 16.7 | 10.4 | 10.4 |
Ile | ATA | 3373624.0 | 11.7 | 22.2 | 33.0 | -10.8 | 10.8 | Leu | CTA | 2418342.0 | 8.4 | 8.9 | 16.7 | -7.7 | 7.7 |
Ile | ATT | 5925942.0 | 20.5 | 39.0 | 33.0 | 6.0 | 6.0 | Leu | CTT | 4540618.0 | 15.7 | 16.8 | 16.7 | 0.1 | 0.1 |
Ile | ATC | 5905801.0 | 20.5 | 38.8 | 33.0 | 5.8 | 5.8 | Leu | CTC | 4907197.0 | 17.0 | 18.1 | 16.7 | 1.5 | 1.5 |
Thr | ACG | 2486009.0 | 8.6 | 15.9 | 25.0 | -9.1 | 9.1 | Pro | CCG | 2861706.0 | 9.9 | 18.9 | 25.0 | -6.1 | 6.1 |
Thr | ACA | 4473401.0 | 15.5 | 28.6 | 25.0 | 3.6 | 3.6 | Pro | CCA | 4491106.0 | 15.6 | 29.7 | 25.0 | 4.7 | 4.7 |
Thr | ACT | 4084032.0 | 14.2 | 26.1 | 25.0 | 1.1 | 1.1 | Pro | CCT | 4142534.0 | 14.4 | 27.4 | 25.0 | 2.4 | 2.4 |
Thr | ACC | 4619047.0 | 16.0 | 29.5 | 25.0 | 4.5 | 4.5 | Pro | CCC | 3615638.0 | 12.5 | 23.9 | 25.0 | -1.1 | 1.1 |
Summs | 288600157.0 | 1000.0 | 2100.0 | 2097.9 | 2.1 | 245.4 | |||||||||
10.14% of CUBmax | |||||||||||||||