Table 3 Positional nucleotide usage frequencies in 113 Species
log(-C) | C1+G1 | C3+G3 | C2+G2 | C2+T2 | C1+T1 | G2+T2 | C3+T3 | G1+T1 | G3+T3 | A3+C3 | A1+C1 | A3+G3 | A2+C2 | A1+G1 | A2+G2 | A2+T2 | A3+T3 | A1+T1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A1+T1 | -100.0 | -38.6 | -38.3 | -8.9 | -7.4 | -4.5 | -3.6 | -1.9 | -0.5 | 0.5 | 1.9 | 3.6 | 4.5 | 7.4 | 8.9 | 38.3 | 38.6 | 100.0 |
A3+T3 | -38.6 | -100.0 | -24.9 | -4.6 | -6.9 | -2.7 | -4.0 | -0.4 | -2.0 | 2.0 | 0.4 | 4.0 | 2.7 | 6.9 | 4.6 | 24.9 | 100.0 | 38.6 |
A2+T2 | 38.3 | -24.9 | -100.0 | -7.1 | -12.8 | -2.9 | -2.3 | -1.1 | -0.2 | 0.2 | 1.1 | 2.3 | 2.9 | 12.8 | 7.1 | 100.0 | 24.9 | 38.3 |
A2+G2 | -8.9 | -4.6 | -7.1 | -100.0 | -3.0 | -7.1 | -5.4 | -11.2 | -0.5 | 0.5 | 11.2 | 5.4 | 7.1 | 3.0 | 100.0 | 7.1 | 4.6 | 8.9 |
A1+G1 | -7.4 | -6.9 | -12.8 | -3.0 | -100.0 | -0.2 | -3.7 | -0.2 | -0.7 | 0.7 | 0.2 | 3.7 | 0.2 | 100.0 | 3.0 | 12.8 | 6.9 | 7.4 |
A2+C2 | -4.5 | -2.7 | -2.6 | -7.1 | -0.2 | -100.0 | -0.8 | -2.4 | -0.2 | 0.2 | 2.4 | 0.8 | 100.0 | 0.2 | 7.1 | 2.9 | 2.7 | 4.5 |
A3+G3 | -3.6 | -4.0 | -2.3 | -5.4 | -3.7 | -0.8 | -100.0 | -1.3 | -1.0 | 1.0 | 1.3 | 100.0 | 0.8 | 3.7 | 5.4 | 2.3 | 4.0 | 3.6 |
A1+C1 | -1.9 | -0.4 | -1.1 | -11.2 | -0.2 | -2.4 | -1.3 | -100.0 | -0.6 | 0.6 | 100.0 | 1.3 | 2.4 | 0.2 | 11 2 | 1.1 | 0.4 | 1.9 |
A3+C3 | -0.5 | -2.0 | -0.2 | -0.5 | -0.7 | -0.2 | -1.0 | -0.6 | -100.0 | 100.0 | 0.6 | 1.0 | 0.2 | 0.7 | 0.5 | 0.2 | 2.0 | 0.5 |
G3+T3 | 0.5 | 2.0 | 0.2 | 0.5 | 0.7 | 0.2 | 1.0 | 0.6 | 100.0 | -100.0 | -0.6 | -1.0 | -0.2 | -0.7 | -0.5 | -0.2- | -2.0- | -0.5 |
G1+T1 | 1.9 | 0.4 | 1.1 | 11.2 | 0.2 | 2.4 | 1.3 | 100.0 | 0.6 | -0.6 | -100.0 | -1.3 | -2.4 | -0.2 | -11.2 | -1.1 | -0.4 | -1.9 |
C3+T3 | 3.6 | 4.0 | 2.3 | 5.4 | 3.7 | 0.8 | 100.0 | 1.3 | 1.0 | -1.0 | -1.3 | -100.0 | -0.8 | -3.7 | -5.4 | 2.3 | 4.0 | -3.6 |
G2+T2 | 4.5 | 2.7 | 2.9 | 7.1 | 0.2 | 100.0 | 0.8 | 2.4 | 0.2 | -0.2 | -2.4 | -0.8 | -100.0 | -0.2 | -7.1 | -2.9 | -2.7 | -4.5 |
C1+T1 | 7.4 | 6.9 | 12.8 | 3.0 | 100.0 | 0.2 | 3.7 | 0.2 | 0.7 | -0.7 | -0.2 | -3.7 | -0.2 | -100.0 | -3.0 | -12.8 | -6.9 | -7.4 |
C2+T2 | 8.9 | 4.6 | 7.1 | 100.0 | 3.0 | 7.1 | 5.4 | 11.2 | 0.5 | -0.5 | -11.2 | -5.4 | -7.1 | -3.0 | -100.0 | -7.1 | -4.6 | -8.9 |
C2+G2 | 38.3 | 24.9 | 100.0 | 7.1 | 12.8 | 2.9 | 2.3 | 1.1 | 0.2 | -0.2 | -1.1 | -2.3 | -2.9 | -12.8 | -7.1 | -100.0 | -24.9 | -38.3 |
C3+G3 | 38.6 | 100.0 | 24.9 | 4.6 | 6.9 | 2.7 | 4.0 | 0.4 | 2.0 | -2.0 | -0.4 | -4.0 | -2.7 | -6.9 | -4.6 | -24.9 | -100.0 | -38.6 |
C1+G1 | 100.0 | 38.6 | 38.3 | 8.9 | 7.4 | 4.5 | 3.6 | 1.9 | 0.5 | -0.5 | -1.9 | -3.6 | -4.5 | -7.4 | -8.9 | -38.3 | -38.6 | -100.0 |