Table 1 REase (DNase) enzymes cutting HSV-2 genome in > 100, but < 400 sites
Enzyme name | Genomic splices (palindrome) |
|---|---|
AccBSI | 164(gagcgg) |
AccI | 111(gt/mkac) |
AclWI | 225(ggatc) |
AflIII | 127(a/crygt) |
Alw21I | 203(gwgcw/c) |
Alw26I | 308 (gtctc) |
AlwI | 225 (ggatc) |
ApaI | 267 (gggcc/c) |
AspHI | 203 (gwgcw/c) |
BbeI | 261 (ggcgc/c) |
Bbv12I | 203 (gwgcw/c) |
BsaWI | 131 (w/ccggw) |
Bse1I | 155 (actgg) |
BseNI | 155 (actgg) |
BsePI | 349 (g/cgcgc) |
BseRI | 213 (gaggag) |
BsiHKAI | 203 (gwgcw/c) |
BsiI | 111 (ctcgtg) |
BsmAI | 308 (gtctc) |
BsmBI | 149 (cgtctc) |
Bsp120I | 267 (g/ggccc) |
BspMI | 123 (acctgc) |
BpmI | 170 (ctggag) |
BsaAI | 155 (yac/gtr) |
BsrBI | 164 (gagcgg) |
BsrI | 155 (actgg |
BsrSI | 155 (actgg) |
BssHII | 349 (g/cgcgc) |
BssSI | 111 (ctcgtg) |
BstZI | 338 (c/ggccg) |
BssT1I | 124 (c/cwwgg) |
BstD102I | 164 (gagcgg) |
BstDEI | 139 (c/tnag) |
BstF5I | 292 (ggatg) |
BstX2I | 108 (r/gatcy) |
BstYI | 108 (r/gatcy) |
Cfr9I | 286 (c/ccggg) |
DdeI | 139 (c/tnag) |
EagI | 338 (c/ggccg) |
EclXI | 338 (c/ggccg) |
Eco130I | 124(c/cwwgg) |
EcoT14I | 124 (c/cwwgg) |
EheI | 261 (ggc/gcc) |
ErhI | 124 (c/cwwgg) |
Esp3I | 149 (cgtctc) |
FokI | 292 (ggatg) |
HincII | 105 (gty/rac) |
HindII | 105 (gty/rac) |
HinfI | 318 (g/antc) |
HphI | 280 (ggtga) |
KasI | 261 (g/gcgcc) |
MaeIII | 244 (/gtnac) |
MboII | 261 (gaaga) |
MflI | 108 (r/gatcy) |
MroNI | 250 (g/ccggc) |
MseI | 116 (t/taa) |
MslI | 124(caynn/nnrtg) |
NaeI | 250 (gcc/ggc) |
NarI | 261 (gg/cgcc) |
NgoAIV | 250 (g/ccggc) |
NgoMI | 250 (g/ccggc) |
NspI | 104 (rcatg/y) |
PleI | 212 (gagtc) |
PpuMI | 169 (rg/gwccy) |
Psp5II | 169 (rg/gwccy) |
PspAI | 286 (c/ccggg) |
PspALI | 286 (ccc/ggg) |
PspOMI | 267 (g/ggccc) |
SfaNI | 279 (gcatc) |
SmaI | 286 (ccc/ggg) |
TfiI | 106 (g/awtc) |
Tru1I | 116 (t/taa) |
Tru9I | 116 (t/taa) |
Tsp45I | 184 (/gtsac) |
TspRI | 109 (cagtg) |
XhoII | 108 (r/gatcy) |
XmaI | 286 (c/ccggg) |
XmaIII | 338 (c/ggccg) |