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Table 1 Analysis of cis-acting elements

From: In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O157:H7 for oral immunogenic applications

Splice site

Original

Optimized

GGTAAG

2

0

GGTGAT

4

0

GTAAAA

1

0

GTAAGT

2

0

GTACGT

0

0

Poly A

  

AATAAA

1

0

AATGAA

0

0

AATGGA

0

0

TATAAA

2

0

AATAAT

3

0

AAAAAAA

1

0

Poly T

  

TTTTTT

1

0

Destabilizing element

  

ATTTA

3

0