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Table 1 Analysis of cis-acting elements

From: In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O157:H7 for oral immunogenic applications

Splice site Original Optimized
GGTAAG 2 0
GGTGAT 4 0
GTAAAA 1 0
GTAAGT 2 0
GTACGT 0 0
Poly A   
AATAAA 1 0
AATGAA 0 0
AATGGA 0 0
TATAAA 2 0
AATAAT 3 0
AAAAAAA 1 0
Poly T   
TTTTTT 1 0
Destabilizing element   
ATTTA 3 0