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Table 1 Summary statistics of the ChIP-Seq dataset.

From: ChIP-PaM: an algorithm to identify protein-DNA interaction using ChIP-Seq data

 

unique reads

Copy percentage

  

Chr

ChIP only

Input only

in both

ChIP only

Input only

in both

Total length

ChIP Read/nt

1-22, X

24.3 M

20.9 M

0.34 M

53.3%

45.9%

0.75%

3B

0.015

Y

11 K

11.6 K

1.7 K

45.5%

47.6%

6.9%

54.7 M

0.0004

M

33

3144

16.5 K

0.17%

15.9%

83.9%

16.5 K

1.191

  1. Shown are selected basic characteristics used in the application, comparing chromosomes 1-22 plus X (combined because they are in the 2-copy state), Chr Y, and mitochondrial chromosomes (M). Chr Y is absent from Hela-S3 cells and indicates sequencing/mapping errors; mitochondrial chromosomes are located in cytoplasm and serve as an internal control for the nuclear chromosomes.
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Theoretical Biology and Medical Modelling

ISSN: 1742-4682