From: An information transmission model for transcription factor binding at regulatory DNA sites
Factor |  |  abf1  |  csre  |  gal4  |  gcn4  |  gcr1  |  hstf  |  mat  |  mcb  |  mig1  |  pho2  |
---|---|---|---|---|---|---|---|---|---|---|---|
SOMBRERO | FP | 0.56 | 0.727 | 0.235 | 0.286 | 0.69 | 0.571 | 0.25 | 0.645 | 0.68 | 0.909 |
 | FN | 0.45 | 0.25 | 0.071 | 0.6 | 0.222 | 0.111 | 0.308 | 0.083 | 0.2 | 0.5 |
MEME | FP | 0.182 | 0.667 | 0.167 | 0.8 | 0.444 | 0.75 | 0.267 | 0.25 | 1 | 1 |
 | FN | 0.55 | 0.5 | 0.286 | 0.92 | 0.444 | 0.333 | 0.154 | 0.25 | 1 | 1 |
AlignACE | FP | 0.375 | 0.824 | 0.083 | 0.444 | 0.625 | 0.556 | 0 | 0.083 | 0.909 | 1 |
 | FN | 0.5 | 0.25 | 0.214 | 0.6 | 0.333 | 0.111 | 0.308 | 0.083 | 0.9 | 1 |
TI model with | FP |  0  |  0  |  0  |  0.182  |  0.333  |  0  |  0  |  0  |  0  |  0  |
25% known TFBS as training set | FN | 0.727 | 0.5 | 0.643 |  0.259  | 0.692 | 0.667 | 0.526 | 0.333 | 0.429 |  0.5  |
TI model with | FP |  0  |  0.333  |  0  |  0.226  |  0.143  |  0  | 0.294 |  0  |  0  |  0  |
50% known TFBS as training set | FN | 0.455 |  0  | 0.286 |  0.037  | 0.308 | 0.5 | 0.158 |  0.083  | 0.214 |  0.375  |
TI model with | FP |  0  |  0  |  0  |  0.25  | 0.615 | 0.783 | 0.25 |  0  |  0  |  0.25  |
75% known TFBS as training set | FN |  0.182  |  0  | 0.143 |  0.037  |  0.077  |  0  | 0.158 |  0  |  0.143  |  0.125  |
TI model with | FP |  0  |  0  |  0  |  0.265  | 0.577 |  0.526  | 0.222 |  0  |  0  |  0.571  |
100% known TFBS as training set | FN |  0  |  0  |  0  |  0  |  0  | 0.167 |  0.053  |  0  |  0.071  |  0  |