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Table 2 Average performance of the artificial sequence data set (r = 3), perf = (kz∩P)/(K∪P), where K is the set of known motif sites and P is the set of predicted motif sites[30]

From: An information transmission model for transcription factor binding at regulatory DNA sites

Length

Index

 gcn4 

 gal4 

 mcb 

Average

 

FP

0.75

0

0.647

0.466

450*10

FN

0.083

1

0.143

0.409

 

perf

0.244

0

0.333

0.192

 

PT/ RT

3.667

0

2.429

2.032

 

FP

0.892

0

0.75

0.547

800*10

FN

0.2

1

0.333

0.511

 

perf

0.105

0

0.222

0.109

 

PT/ RT

7.4

0

2.667

3.356

 

FP

0.936

0

0.756

0.564

1250*10

FN

0.25

0.875

0.286

0.470

 

perf

0.063

0.143

0.222

0.143

 

PT/ RT

11.75

0.143

2.929

4.941

  1. In this table, PT/ RT is defined as the ratio of predicted TFBS versus the pseudo-TFBSs.