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Table 1 Boolean functions for the nodes in the FA/BRCA network

From: Fanconi anemia cells with unrepaired DNA damage activate components of the checkpoint recovery process

RULES

REFERENCES

 

ICL ← ICL ¬ DSB

[38]

 

FAcore ← ICL (ATR ATM) ¬ CHKREC

[14, 16, 4446]

 

FANCD2I ← FAcore ((ATR ATM) ((ATR ATM) DSB))

[4749]

 

¬ (CHKREC)

  

NUC1 ←ICL FANCD2I

[50]; [38]

 

NUC2 ← (ICL (ATR ATM) ¬ (FAcore FANCD2I))

[51]; [38]

 

(ICL NUC1 p53 ¬(FAcore FANCD2I))

  

ADD ← (NUC1 NUC2 (NUC1 NUC2)) ¬ (TLS)

[47, 50, 51]

 

DSB ← (NUC1 NUC2) ¬ (NHEJ FAHRR HRR2)

[50, 52]

 

TLS ← (ADD (ADD FAcore)) ¬ (CHKREC)

[53, 54]

 

FAHRR ← DSB FANCD2I ¬ (NHEJ CHKREC)

[53, 54]

 

HRR2 ← (DSB NUC2 NHEJ ICL ¬ (FAHRR CHKREC))

[38]

 

(DSB NUC2 TLS ¬ (NHEJ FAHRR CHKREC))

  

NHEJ ← (DSB NUC2 ¬ (FAHRR HRR2 CHKREC))

[49, 52, 5557]

 

ATR ←(ICL ATM) ¬ CHKREC

[5860]

 

ATM ← (ATR DSB) ¬ CHKREC FAcore

[61, 62]

 

P53 ← ((ATR ATM) NHEJ) ¬ CHKREC

[58, 63, 64]

 

CHKREC ← ((TLS NHEJ FAHRR HRR2) ¬ DSB)

[52, 53];

 

((¬ ADD) (¬ ICL) (¬ DSB) ¬ (CHKREC))

[38, 65]

 
  1. Key references are included. Full discussion of interactions can be found in [38]