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Table 3 Results of PDON evaluation based on expert questions. For both competency questions, PDON-driven search in SCAIView retrieved less number of abstracts than simple queries in PubMed but more relevant to the questions (i.e. less noise). This performance efficiency for the PDON-driven search has been calculated in percent as shown in the last column

From: PDON: Parkinson’s disease ontology for representation and modeling of the Parkinson’s disease knowledge domain

Competency question number

Total no. of abstracts retrieved by PDON in SCAIView

No. of PDON-derived abstracts answering the questions

Total no. of abstracts retrieved by PubMed

No. of PubMed-derived abstracts answering the questions

PDON-driven retrieval efficiency (% PDON retrieval - % PubMed retrieval)

1

70

20

95

20

28.7 %-21 %: 7.7 %

2

6

5

3

1

83.3 %-33.3 %: 50 %