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Table 1 The transition probability matrix for a single pathogen with the SEIR states

From: Effects of pathogen dependency in a multi-pathogen infectious disease system including population level heterogeneity – a simulation study

    Time = t + 1   
   Susceptible Exposed Infectious Recovered
  Susceptible 1 − TP 1(t) TP 1(t) 0 0
Time = t Exposed 0 1 − TP 2 TP 2 0
  Infectious 0 0 1 − TP 3 TP 3
  Recovered 0 0 0 1