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Table 2 Expected/calculated proportions/frequencies of the 16 dinucleotides and GC contents obtained by MDM (GCini %  = 50%)

From: Methylation-driven model for analysis of dinucleotide evolution in genomes

 

ApA/TpT

ApC/GpT

ApG/CpT

ApT

CpA/TpG

CpC/GpG

CpG

GpA/TpC

GpC

TpA

GC%

Proportionexp vs. Proportionini

↑

↓

↑

↑

↑

↓

↓

↓

↓

↔

↓

Bos Taurus (cattle)

13.82%

12.12%

13.84%

7.71%

17.70%

11.16%

1.05%

11.18%

5.17%

6.25%

44.80%

Canis lupus familiaris (dog)

13.72%

12.22%

13.98%

7.62%

17.66%

11.02%

1.09%

11.28%

5.15%

6.25%

44.84%

Gallus gallus (chicken)

13.60%

11.87%

13.66%

7.99%

17.62%

11.34%

1.14%

11.40%

5.14%

6.25%

44.89%

Pan troglodytes (chimpanzee)

13.74%

12.29%

13.90%

7.66%

17.74%

11.10%

1.01%

11.26%

5.05%

6.25%

44.76%

Danio rerio (zebrafish)

13.62%

12.34%

13.44%

7.54%

16.96%

11.56%

1.79%

11.38%

5.12%

6.25%

45.54%

Homo sapiens (human)

13.67%

12.44%

13.98%

7.59%

17.76%

11.02%

0.98%

11.33%

4.97%

6.25%

44.98%

Mus musculus (house mouse)

13.84%

12.06%

13.90%

7.79%

17.90%

11.10%

0.85%

11.16%

5.14%

6.25%

44.60%

Papio anubis (olive baboon)

13.66%

12.42%

13.98%

7.58%

17.70%

11.02%

1.05%

11.34%

5.01%

6.25%

44.80%

Ovis aries (sheep)

13.78%

12.17%

13.84%

7.69%

17.68%

11.16%

1.08%

11.22%

5.14%

6.25%

44.83%

Sus scrofa (pig)

13.72%

12.22%

13.96%

7.63%

17.66%

11.04%

1.09%

11.28%

5.15%

6.25%

44.99%

  1. Note: The values presented were obtained by application of MDM to the assumed initial genome state with GCini% = 50%; the symbols‘↑’, ‘↓’ and ‘↔‘represent an increase, decrease, and no-change of the expected/calculated dinucleotide proportions (Proportionexp) relative to the assumed initial proportions (Proportionini; see Supplementary Table 3, Additional file 1), respectively