From: Construction and analysis of a modular model of caspase activation in apoptosis
Differential equations | Reaction velocities |
---|---|
d [DISC]/dt = μDISC(fDISC([FasL]0, [FasR]0; KDISC) - [DISC]) | v1 = k1 [DISC] [Casp8] |
d [Casp8]/dt = -v1 - v2 + αCasp8 - μCasp8 [Casp8] | v2 = k2 [Casp3*] [Casp8] |
d [Casp8*]/dt = v1 + v2 - v6 - μCasp8* [Casp8*] | v3 = k3 [Casp8*] [Casp3] |
d [Casp3]/dt = -v3 - v13 + αCasp3 - μCasp3 [Casp3] | v4 = k4 [Casp3*] [XIAP] - k-4 [Casp3*-XIAP] |
d [Casp3*]/dt = v3 - v4 + v13 - μCasp3* [Casp3*] | v5 = k5 [Casp3*] [XIAP] |
d [XIAP]/dt = -v4 - v5 - v10 - v14 + αXIAP - μXIAP [XIAP] | v6 = k6 [Casp8*] [BAR] - k-6 [Casp8*-BAR] |
d [Casp3*-XIAP]/dt = v4 - μCasp3*-XIAP [Casp3*-XIAP] | v7 = k7 [Casp8*] [Bid] |
d [BAR]/dt = -v6 + αBAR - μBAR [BAR] | v8 = k8 [tBid-Bax2] [Cytc] |
d [Casp8*-BAR]/dt = v6 - μCasp8*-BAR [Casp8*-BAR] | v9 = k9 [tBid-Bax2] [Smac] |
d [Bid]/dt = -v7 + αBid - μBid [Bid] | v10 = k10 [Smac*] [XIAP] - k-10 [Smac*-XIAP] |
d [tBid]/dt = v7 - μtBid [tBid] | v11 = k11 [Apop] [Casp9] |
d [tBid-Bax2]/dt = | v12 = k12 [Casp3*] [Casp9] |
( ([tBid], [Bax]0 ; ) - [tBid-Bax2]) | v13 = k13 [Casp9*] [Casp3] |
d [Cytc]/dt = -v8 + αCytc - μCytc [Cytc] | v14 = k14 [Casp9*] [XIAP] - k-14 [Casp9*-XIAP] |
d [Cytc*]/dt = v8 - μ Cytc* [Cytc*] |  |
d [Smac]/dt = -v9 + αSmac - μSmac [Smac] |  |
d [Smac*]/dt = v9 - v10 - μSmac* [Smac*] |  |
d [Smac*-XIAP]/dt = v10 - μSmac*-XIAP [Smac*-XIAP] |  |
d [Apop]/dt = μApop(fApop([Cytc*]/[Apaf]0 ; λApop) - [Apop]) |  |
d [Casp9]/dt = -v11 - v12 + αCasp9 - μCasp9 [Casp9] |  |
d [Casp9*]/dt = v11 + v12 - v14 - μCasp9* [Casp9*] |  |
d [Casp9*-XIAP] = v14 - μCasp9*-XIAP [Casp9*-XIAP] |  |