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The effect of group A streptococcal carrier on the epidemic model of acute rheumatic fever
Theoretical Biology and Medical Modelling volume 16, Article number: 14 (2019)
Abstract
Background
Group A streptococcus (GAS) is the most frequent cause of bacterial pharyngitis in schoolaged children. The postinfection sequel as acute rheumatic fever (ARF) and rheumatic heart disease that cause morbidity and mortality among young people is public health concerns in several developing countries. Asymptomatic carriage state of GAS is not fully understood in terms of host and bacterial factors. Although the ability of transmitting GAS of the asymptomatic carriers is relatively low, they may present the reservoir of the epidemic. A fraction of GAS carriers is difficult to estimate in practice and may greatly vary between populations. Understanding the role of carriage on the transmission dynamic of GAS is important for assessing the public health impact of the ARF.
Method
This study investigates the effect of GAS carriers on both the transmission and dynamic of ARF cases by using a mathematical model.
Result
We derive the sufficient conditions for which the GAS can spread or extinct from the naive population under the variation of the fraction of symptomatic cases over the incidence of GAS. The threshold is possible to occur in general, but the last condition which is rather restrictive and involves parameter uncertainty. The increasing of carriers in the endemic state leads to the reduction in magnitude of the reproduction number and the number of ARF patients. We demonstrate that the adjustment of parameters can be carried out by the use of endemic state and some specific data.
Conclusion
We show theoretically that the presence of asymptomatic carriers may induce the epidemic threshold and reduce the virulence of GAS and the prevalence of ARF.
Background
Acute Rheumatic Fever (ARF) is an inflammatory disease which developed as a sequel of group A βhemolytic streptococcal (GAS) pharyngitis [1–3]. The illness by ARF is ranging from fever, the inflammation of joints, carditis to the chorea. The possible consequence as chronic rheumatic heart disease is considerable as lifethreatening, leading to heart failure and death. Among the ARF patients, the rheumatic heart disease is a major cause of morbidity and mortality among children and young people (between 515 years of age). Nowadays, ARF may be considerable as a rare disease in some regions, it is significant public health concerns around the world, especially in developing countries [4, 5]. The incidence of ARF varies greatly between 0.08–20 per 100,000 during the beginning of the 20th century [2]. Also, the predicted trend shows the significant variation between counties. Prevention and the treatment of ARF directly involve the effective diagnosis and antibiotic treatment of GAS [3]. Untreated streptococcal infections or experiencing ARF patients receive an increasing risk for ARF development and its recurrence.
Streptococcus pyogenes is responsible for 10 to 30% of pharyngitis in children [6, 7]. It was estimated that 5–15% of schoolaged children harbor GAS in pharynx but do not develop symptom. These may be characterized as a carriage state of GAS [8–10]. Although the exact definition of carrier remains elusive [11, 12], the most common feature involving in the transmission is asymptomatic. The identification of the carrier can be carried out only by a bacterial culture or a rapid antigen detection test [13, 14]. Since the carriers do not have GAS symptom, except for the common symptoms caused by viral infection, the evaluation of the fraction of carriers among the population under study may be obscure.
GAS can be transmitted mainly via respiratory droplets. Patients who are asymptomatic carriers are thought to have a low ability to transmit the infection to the others [13, 15]. Since the carriers have no respiratory symptoms such as cough or coryza for the majority of the time that they are carriers, the possibility of spread of GAS to the environment is relatively low. Little increased possibility may caused by the respiratory symptoms that developed by virus infection [11]. Autoimmune response to GAS infection in genetically predisposed individuals is believed to be the cause of ARF development in GAS patients [1]. The risk is increased for untreated GAS patients and the patient who had ARF. On the other hand, the risk of ARF development in carriers is not confirmed, due to the sparsity of direct evidence. Although carriage is thought not to be a risk for ARF, switching GAS carriage emm types may be at risk of ARF [13].
This study aims at contributing to the hypothesis that the presence of carriers can reduce the virulence of GAS during the epidemic in the general population. Moreover, if the ARF cases is assumed to be directly proportional to the GAS patients, the reduction in ARF prevalence caused by the presence of carriers could be as a byproduct or secondary impact. However, the conclusion may not be straightforward since the carriers normally constitute an important reservoir of GAS infection [11, 16]. To understand the role of carrier on the epidemic of GAS and ARF, we develop a mathematical model for the transmission dynamic of GAS incorporating with the ARF compartment. According to the determinism, the key measures as the basic reproduction number and the endemic state are emphasized. The first quantity is used to address whether the threshold property driven by carrier arises, and the latter will be used to explain the role of parameter variation and provide the framework for the estimation of parameters when dealing with the data.
Method
Mathematical model
We use the standard compartmental SIS model to describe the infection of GAS and the development of ARF. According to [12], the symptomatic infections (or infectious class) is labeled by I, and asymptomatic carriers (or carrier) is labeled by C. Although the carriage state can be defined in other different ways (see [11]), it is reasonable to use the asymptomatic state as a gauge for discriminating the infected compartment in order to prevent the vagueness. Since the carriers cannot be cured from the treatment with an appropriate antimicrobial agent, we will not consider the recovery of carriers for the present model.
We assume that a fraction, α, of GAS infections result in illness followed by recovery with no immunity, and on the other hands, the fraction, 1−α, will lead to persistence of GAS in the carrier state. Since the transmission by carriers is relatively low, the force of infection by carrier is always lower than another. Although carriers harbor GAS for long periods, they may be at risk to develop symptomatic infection later. Hence, the flow rate to infectious class is possible. The effectiveness of treatment for the symptomatic case may not be perfect, it is possible that a little portion of incomplete eradication can be accounted for carrier. Therefore, even with the very low rate, we assumed that the interchange between infectious and carrier groups is possible.
The infectious group and carriers are at risk to develop ARF with different conditions and degree. The carrier is known to have a little risk to develop ARF, while the infectious individual has a greater chance. For simplicity, the risk to develop ARF is homogeneous among infectious individuals and carriers. In our model, a person who has ARF can be treated and goes into the susceptible state. As in [15], we furnish the model by letting A be the state of ARF. In summary, the model equations are given by
Here, all variables describe the number of individuals in each disease state at time t, and the definitions of model parameters are described in Table 1. We note that the transmission coefficients β_{i},i=1,2 are defined as the product of the contact rate ϕ and the transmission probabilities per single contact p_{i}, divided by the total population size. It is easy to see that all variables of the system (1)(4) are nonnegative for all t>0. Let N=S+I+C+A be a total population. By adding all equations together, we obtain
Thus, the population tends to a steadystate at Λ/μ, as t→∞. Throughout, we will focus the dynamic of the system (1)(4) only on the steadystate population.
Results
The basic reproduction number of GAS epidemic
The basic reproduction number R_{0} is defined as the average number of secondary infections by an index case introduced into the whole susceptible population during the infectious period [18]. The quantity is important in epidemiology, which depends on the method of derivation. For the deterministic model, R_{0} exhibits the threshold of the epidemic, i.e., if R_{0}<1, then the disease eventually dies out, and if R_{0}>1, then the epidemic occurs. Since R_{0} is a function of model parameters, the threshold can be viewed as driven by a critical parameter.
We first derive R_{0} of the GAS epidemic by using the next generation method [19, 20]. After setting the right hand sides of Eqs. (1)(4) equal to zero, we obtain the diseasefree equilibrium:
At the diseasefree equilibrium, we define the matrices
which describe the rate of appearance of new infections and the rate of other transitions, respectively. Hence, the next generation matrix can be calculated as FV^{−1}, and we can obtain R_{0} from its spectral radius as
where
Just as in [16], the form of R_{0} is the sum of two terms, each of which describes the transmitability of the group weight by a term describing the fraction of symptomatic infection and other transitions. In our case, R_{1} represents the basic reproduction number of GAS when there is no carriers, and R_{2} is the basic reproduction number in the absence of infectious individuals.The parameter κ lies in (0,1], which is a linear function of the effectiveness of treatment θ.
Threshold analysis of GAS epidemic
The existence of carriers induces the silent epidemic for GAS. However, it is not clear to what extent the carrier size has an impact. More precisely, we may ask if the variation in an incidence of carriers can bring the epidemic threshold? and if so, on what conditions? In this section, we will address such questions by analyzing the threshold property of R_{0}. The goal is to determine the condition at which the threshold induced by the fraction α exists.
We first assume that R_{1}>R_{2}. This is reasonable assumption at least in the broad sense, namely the relative rate of flow outs from the infectious state does not high enough to overcome the relative transmission rate:
We note that, albeit the above relation is reversed, the following results can be obtained in the same manner.
From (6), R_{0} can be viewed as a linear function of α as
where the slope and the interception are given by
Since κ<1, it is clear that R_{1}−κR_{2}>0. Under the present assumption, R_{0} is linearly increasing with α. Since 0≤α≤1, it follows that
Hence, the epidemic threshold induced by α can occur only subject to the conditions,
To examine through parameter conditions such that the above relations are satisfied, we first observe that
So, we must provide that R_{1}>κ, otherwise the threshold would never exist. On the other hands, by (9), it can be seen that R_{0}(0)>R_{2}. Thus, we must put R_{2}<1, so that the threshold is possible.
Consider
By Eq. (9), we just now proved that R_{0}(1)>1 without further condition. To complete the required sufficient conditions, we only force
This implies that, R_{0}(0)<1.
In summary, the parameter conditions such that the threshold of GAS epidemic induced by the parameter α exists are given by

R_{2}<1,

R_{1}>1, and

ε(R_{1}−κ)<(δ_{2}+μ)(1−R_{2}).
The last condition seems to be more restrictive than the first two conditions since the force of infection by the symptomatic patient is normally stronger than by the asymptomatic carrier. To satisfy the last condition, it may be sufficient to assume that the rate of progression to symptomatic infection of carriers is sufficiently low.
Suppose that the above conditions are satisfied. The critical value of α, that is α_{c} can be determined by solving an equation R_{0}(α_{c})=1. Here, we have
Therefore, R_{0}<1, if α<α_{c}, and R_{0}>1 if α>α_{c}. Theoretically speaking, to contain the spread of GAS, the infections per unit time must produce at least 1−α_{c}, a fraction of carriers.
Parameter values and the threshold of epidemic
To demonstrate the threshold by model solutions, a set of parameter values must be derived. Nevertheless, the relevant information about the parameter estimation is sparse. Some parameters may be difficult to estimate, for example, the fraction of new infections leading to the carrier, 1−α, and the transfer rate from carriers to ARF group, δ_{2}. Here, we sought to use the most informative data available in the literature to determine the ranges of parameter values (see Table 1 for the range and references). We choose a particular value for each parameter from its possible range, so that the existence conditions for the threshold are satisfied. The limitations and the reasons for using the baseline values are described as follows.
Throughout, the population size is set to be one thousand with an average life span of 70 years. Thus, the recruitment rate Λ is 0.0391 per day. As in previous work [12], the transmission rates, β_{i},i=1,2, are defined as the product of contact rate and the transmission probability per single contact divided by the total population:
The contact rate, ϕ is given by two times per day, while the transmission probabilities are assumed to be 0.9 and 0.001, when a contact made by an infectious individual (p_{1}) and made by a carrier (p_{2}), respectively.
The treatment of GAS infection is usually a 10day course of oral penicillin or a single dose of intramuscular benzathine benzylpenicillin [1]. An active antibiotic treatment results in negative throat cultures within 24 h in more than 80% of patients [6]. By this we infer that the efficacy of GAS treatment is high that is between 80% and 100%. We choose the midpoint of the treatment efficacy, that is 90%. The recovery rate conditioned on the perfect treatment is approximated as the inverse of the treatment duration. We assume that it is between one to 10 days. Since the treatment is assumed to be perfect, we choose γ_{1}=0.7.
The outflow rate from the carrier to infectious state, ε is not exactly known. The presence of the subsequent episodes of symptomatic pharyngitis may vary in the degree of virulence and the factor determining whether the individual becomes a GAS carrier [21]. The lack of information about the duration of carriers makes the estimation difficult. The interval of long period (one to four years) was used in modeling work [12], while the interval of short period (3–34 weeks) is evident in empirical study [13]. The latter means the period at which the children carried a single emm type. To fulfill the existence condition (iii), the value must be sufficiently low. We assume that its average is one year, thus ε=1/365, per day.
Although, the pathogenesis of ARF remains incompletely understood, the immune response to GAS infection is believed to play a prominent role [21]. The evidence shows that the patients who had ARF had significant rises in the antibody to the extracellular antigens [11], which increases the risk to the recurrent ARF. On the other hand, if a GAS infection is not properly treated, ARF may develop after two to three weeks [15]. This is supported by the observation of 92% of individuals who developed ARF within a month of acquiring GAS (see reference in [13]). If δ_{1} is modeled by the inverse of such period, then its value is between 0.04 to 0.07 per day. Since the rate is per capita, it should be multiplied by the risk factor which lies between 0.3−3% [15]. However, the baseline value is assumed to be 0.05, to ease the threshold condition. The development rate of ARF among carriers is not known in the literature. We hypothesize that the carrier has a relatively low risk for ARF, namely δ_{2}<δ_{1}. In this case, we choose δ_{2}=0.02.
The recovery rate of ARF, γ_{2} is approximated as the inverse of an average treatment duration. The treatment of ARF has three primary goals, and the duration depends on the severity of clinical symptom [1]. Treatment of GAS infection is the first priority, usually followed by the variety of antiinflammatory medications. The medications are given until the inflammatory markers normalized, usually within 4 to 6 weeks [4]. Since the model assumed that an individual who recovered from ARF becomes susceptible to the GAS infection, the duration of GAS treatment is quite preferable to the choice of the recovery rate of ARF for the present model.
According to such parameter values (see Table 2), we calculate R_{1}=2.4,R_{2}=0.09 and κ=0.9. By these results all conditions for threshold are satisfied so that we get α_{c}=0.3. Based on theoretical prediction if we put α=0.1, then the disease must die out (See Fig. 1a), and if we put α=0.5, then the disease persists (see Fig. 1b). Throughout the numerical calculation, we use the initial condition, S(0)=999,I(0)=1,C(0)=0, and A(0)=0.
Sensitivity analysis
We perform sensitivity analysis of R_{0} and α_{c} in order to determine the influence of the model parameters and to inform the degree of uncertainty on a particular set of parameter values. Here, the local sensitivity indices are calculated for both outputs at a common set of baseline parameter values. Suppose that p is an input parameter. The normalized forward sensitivity index of the output, u is calculated by
In Table 2, 10 from 12 input parameters are tested for the sensitivity of R_{0}, and 9 parameters are tested for the sensitivity of α_{c}. We note that R_{0} does not depend on Λ, and γ_{2}, and, the sensitivity index of R_{0} to α is calculated at α_{c}. Thus, the index determines how the value of R_{0} changes from unity. For both outputs, we find that the contact rate, ϕ is the most sensitive parameter. The other important parameters are p_{1},γ_{1}, and α, respectively. Except for γ_{1}, such three parameters have a positive influence to R_{0}, and the direction is reversed for α_{c}. The result can be interpreted as follows. Since R_{0}=1, at α=α_{c}, the sensitivity index for α_{c} can be calculated as
From Eq. (9), it is easy to verify that the partial derivative of R_{0} with respect to α is positive. Thus, the sign of sensitivity index of α_{c} is opposite to the sign of sensitivity index of R_{0}. If an increase of one parameter leads to increasing of R_{0}, the value of α_{c} is decreased. The latter means that the area for R_{0}>1 is extended.
GAS persistence and the implication of ARF
The existence of endemic state
Persistence of a disease pathogen in a population, including demographic effects is determined by the socalled endemic state, the positive equilibrium point of the model. Here, we will show that the existence of this equilibrium depends only on the parameter R_{0}, that is R_{0}>1.
Let (S^{∗},C^{∗},I^{∗},A^{∗}) be an endemic state of the system (1)(4). By solving a system of algebraic equations directly, we obtain
From Eq. (2), we can write
By rearranging the expression of R_{0}, we have
This shows that R_{0}>αR_{1}. Thus, if I^{∗} is positive, then so is C^{∗}.
From Eq.(4), we obtain
Substituting this into S^{0}=S^{∗}+I^{∗}+C^{∗}+A^{∗}, we have
We have seen that the endemic state can be uniquely determined only if the positive value of I^{∗}, exists. From the above equation, if R_{0}>1, then I^{∗} can be solved for positive value, followed by the rest of the variables. Thus, we have shown that the endemic state exists and unique.
The effect of GAS carriers on ARF
So far, we have seen that the carriers when incorporated into the system could reduce the total virulence of GAS epidemic comparing to which the infections completely produce the infectious cases under the same parameters condition. We now suppose that R_{0}>1, which guarantees the persistence of GAS followed by ARF. Analyzing the role of GAS carriers on the endemic state of ARF is nontrivial. Instead of using the explicit expression, we first focus on the impact of two relevant parameters θ and α, the treatment efficacy and the probability that a new infection resulting in the infectious state. Since the remaining fractions contribute to the growth rate of the carrier group, increase of such parameter values is, in turn reduce the growth rate. In an extreme case, i.e., θ=1 and α=1, the carrier is absolutely absent from the system. In this case, our model recovers the model of [15]. Thus, the impact on ARF is comparable when such couple parameters are continually decreased.
Based on the set of parameter values used in the previous case, we focus on the variations of θ and α in a small region that gives R_{0}>1 (see Fig. 2a). Within that parameter space the endemic state of ARF is depicted in Fig. 2b. It is seen that in the absence of carrier, the model predicts highest level of ARF. As the growth rate of carriers increases, the number of ARF patients becomes decreasing. The reason behind this is that we have set that δ_{2}<δ_{1}. The development rate to ARF is assumed to be proportional to the infected population, and that of carrier group is relatively low.
Model calibration
The numerical results under a trial of parameters seems against the general perception, especially the ARF cases are looking overestimated (see Fig. 1). To be more realistic, but specific, we roughly adjust a set of parameter values according to data obtained by a field study and a basic information about ARF. A simple procedure is developed based on the use of endemic state.
The rate of carriage depends highly on how carriers are defined and population under study. Among school surveys, it was found that the number of carriers is between 8% to 40%. Here, we refer particularly to a 4year longitudinal study of schoolaged children [13]. From laboratory analysis of throat cultures of samples, the mean prevalence of carriers among general population is about 16%. By connecting this with the model, we deduce that C^{∗}≈0.16S^{∗}.
It is also recognized that 0.3% to 3% of people will develop ARF following a GAS infection [1]. To be simplified, we use the average value, that is about 1.65% of infectious individuals. Hence, we deduce that A^{∗}≈0.0165I^{∗}.
By using these two approximations, it might be able to solve for two unknown parameters, say α and δ_{2}. Due to the nonlinear relationship between parameters, the analytic formula of solution is difficult to obtain. Moreover, the solution of nonlinear system does not always exist. By the existence we mean that the solution must be nonnegative real and less than or equal to one. To deal with this difficulty, we solve the equations numerically. It can be seen that the solution does not exist by using the baseline of parameter values in Table 2. Thus, reconsidering the choice of baseline parameters is required.
After numerical trails, values of γ_{1},p_{1},ε and δ_{1} are adjusted as follows (see Table 3). The recovery rate of GAS patient has increased from 0.7 to 0.9 per day. The transmission probability per contact from the symptomatic GAS patient is reduced from 0.9 to 0.5, which is below the range. The transfer rate from the carrier to infectious class is increased by reducing the time that an individual spent in a carrier state before changing to symptomatic infection from one year to a month. We note that this period satisfies the short duration given by [13]. The last parameter that was changed is the rate at which ARF develops in the infectious class. As mentioned earlier, we multiplied the baseline value by 0.1 which represents the probability that a GAS patient develops ARF. This is because GAS remains present in the throat even after adequate treatment in about 10% of cases [2].
By using the adjusted baseline, we find α=0.9971, and δ_{2}=0.0025. This implies that, to match the endemic state of the model with the real data, only about 0.3% of GAS incidence are the carriers, and the rate at which those carriers develop ARF is low, i.e., 0.0025 per day. It is observed that the predicted value of δ_{2} is less than of δ_{1}. Moreover, the new set of parameter values does not fulfill the third existence condition of the threshold, which implies that R_{0}>1, for all α. As a result, we obtain that R_{1}=1.105,R_{2}=0.7731, and R_{0}=1.2233.
Clearly, the result of estimation has a degree of uncertainty. Once the baseline values are changed, the estimation gives the new couple α, and δ_{2}. One may ask how sensitive is the estimation to the baseline parameters, and which parameters influence. We perform the sensitivity analysis for the parameter estimation based on perturbation of fixed point estimations [22]. A series of tests are performed on the adjusted baseline in Table 3. Since it is impossible to determine the exact formulas of α, and δ_{2} in terms of other parameters, the sensitivity index of α with respect to the parameter p is approximated as
For 10 input parameters to be tested, changing is taken as 1% in positive direction except for ϕ, and p_{1}, the change is backward in 1%. This is because the solution of the nonlinear system does not exist when the forward change is taken on such parameters. The result shows that the four highest sensitive parameters are ϕ,p_{1},θ, and γ_{1}. The magnitude of sensitivity index of δ_{2} is relatively high, since the value of δ_{2} is relatively small. The sign of index indicates that the estimated values of α, and δ_{2} decrease as the transmission rate of infectious class is decreased. On the other hand, their values decrease as the recovery rate of GAS increases.
Conclusions and discussion
Threshold analysis was exemplified for studying the role of carrier on GAS epidemic. The fraction of new infections that develop clinical symptoms, α is assumed as a key measure to determine the outbreak of GAS under the certain conditions. Specifically, if R_{1}>R_{2}, then R_{0} increases with α. It should be noted that this is not necessary in general. Suppose that κR_{2}>R_{1}, we find that R_{0} decreases with α. In this case, it is easy to verify that the analytic results can be obtained in a similar way under the reverse direction.
In addition to α, the effect of carrier might be expressed through other ways. The parameters κ and ε, for instance, involve in the transfer rates of carrier class. The first one, however, slightly vary close to unity due to the fact that the treatment of GAS in general is almost perfect. Unlike the second parameter, the value of ε can be much vary across the different populations. For example, in a schoolaged survey over a 4 years period, the duration of carrier state ranged from 10 weeks to 127 weeks. The more prolong for the period of carrier, the more reducing the outflow rate. In the very small value of ε, it tends to satisfy the third condition for the threshold to be existing. On the other hand, if the value of ε is not small as estimated in the last section, the further analysis of epidemic threshold incorporating with the first two conditions may be required.
In summary, we have shown that the presence of carrier theoretically reduces the virulence of GAS and the incidence of ARF as the secondary impact. Due to the lack of data, the analysis of dynamic properties of endemic state is limited. Nevertheless, the formulas for endemic state was shown to be sufficiently useful in capturing the epidemiological aspect of the carrier state in a specific population. However, the more systematic procedure of parameter estimation is required to better explain the existing data. Moreover, the model modification and extension are also noted for future development. As far as the pathogenesis of ARF is ongoing research, the gap of new modeling approach in this topic is still held. The stochastic model of ARF development should be focused, and also one can account for the infection profiles of individual for both GAS and ARF, which usually increases the risk of ARF recurrence. In this case, the heterogeneity of the population should be paying attention on both the transmission of GAS and the development of ARF.
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Abbreviations
 ARF:

Acute rheumatic fever
 GAS:

Group A streptococcus
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NP and KP designed the study and the model. NY and KP performed analysis and numerical calculations. KP wrote a manuscript. All authors read and approved the final manuscript.
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Yokchoo, N., Patanarapeelert, N. & Patanarapeelert, K. The effect of group A streptococcal carrier on the epidemic model of acute rheumatic fever. Theor Biol Med Model 16, 14 (2019). https://doi.org/10.1186/s1297601901108
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DOI: https://doi.org/10.1186/s1297601901108